Index _ | A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | R | S | T | U | V _ __contains__() (torch_brain.data.ArrayDict method) (torch_brain.data.Data method) (torch_brain.data.Interval method) (torch_brain.data.IrregularTimeSeries method) (torch_brain.data.LazyArrayDict method) (torch_brain.data.LazyInterval method) (torch_brain.data.LazyIrregularTimeSeries method) (torch_brain.data.LazyRegularTimeSeries method) (torch_brain.data.RegularTimeSeries method) __getitem__() (torch_brain.datasets.Dataset method) (torch_brain.datasets.NestedDataset method) __len__() (torch_brain.data.ArrayDict method) (torch_brain.data.Interval method) (torch_brain.data.IrregularTimeSeries method) (torch_brain.data.LazyArrayDict method) (torch_brain.data.LazyInterval method) (torch_brain.data.LazyIrregularTimeSeries method) (torch_brain.data.LazyRegularTimeSeries method) (torch_brain.data.RegularTimeSeries method) A absolute_start (torch_brain.data.Data property) AllenVisualCodingOphys2016 (class in torch_brain.datasets) apply_namespace() (torch_brain.datasets.AllenVisualCodingOphys2016 method) (torch_brain.datasets.ChurchlandShenoyNeural2012 method) (torch_brain.datasets.Dataset method) (torch_brain.datasets.KempSleepEDF2013 method) (torch_brain.datasets.KlinzingSleepDS005555 method) (torch_brain.datasets.KochiVisualNamingDS006914 method) (torch_brain.datasets.Neuroprobe2025 method) (torch_brain.datasets.OdohertySabesNonhuman2017 method) (torch_brain.datasets.PeiPandarinathNLB2021 method) (torch_brain.datasets.PerichMillerPopulation2018 method) (torch_brain.datasets.ShiraziHBNR1DS005505 method) (torch_brain.datasets.VollanMoserAlternating2025 method) arange() (torch_brain.data.Interval class method) (torch_brain.data.LazyInterval class method) args (torch_brain.pipeline.BrainsetPipeline attribute) ArrayDict (class in torch_brain.data) B bin_spikes() (in module torch_brain.utils) BinSpikes (class in torch_brain.transforms) brainset_id (torch_brain.pipeline.BrainsetPipeline attribute) (torch_brain.pipeline.openneuro.OpenNeuroPipeline attribute) BrainsetDescription (class in torch_brain.data) BrainsetPipeline (class in torch_brain.pipeline) build_bids_path() (in module torch_brain.utils.bids) C CalciumImagingDatasetMixin (class in torch_brain.datasets) chain() (in module torch_brain.batching) CHANNEL_NAME_REMAPPING (torch_brain.pipeline.openneuro.OpenNeuroPipeline attribute) check_eeg_recording_files_exist() (in module torch_brain.utils.bids) check_ieeg_recording_files_exist() (in module torch_brain.utils.bids) ChurchlandShenoyNeural2012 (class in torch_brain.datasets) close() (torch_brain.data.Data method) coalesce() (torch_brain.data.Interval method) (torch_brain.data.LazyInterval method) collate() (in module torch_brain.batching) Compose (class in torch_brain.transforms) compute_average_firing_rates() (torch_brain.datasets.ChurchlandShenoyNeural2012 method) (torch_brain.datasets.OdohertySabesNonhuman2017 method) (torch_brain.datasets.PeiPandarinathNLB2021 method) (torch_brain.datasets.PerichMillerPopulation2018 method) (torch_brain.datasets.SpikingDatasetMixin method) (torch_brain.datasets.VollanMoserAlternating2025 method) concat() (in module torch_brain.data) concatenate_recordings() (in module torch_brain.utils.mne) ConditionalChoice (class in torch_brain.transforms) construct_s3_url_from_path() (in module torch_brain.utils.openneuro) cube_to_long() (in module torch_brain.utils.signal) D Data (class in torch_brain.data) Dataset (class in torch_brain.datasets) dataset_id (torch_brain.pipeline.openneuro.OpenNeuroPipeline attribute) DatasetIndex (class in torch_brain.datasets) datasets (torch_brain.datasets.NestedDataset property) delete_nested_attribute() (torch_brain.data.Data method) derived_version (torch_brain.pipeline.openneuro.OpenNeuroPipeline attribute) describe_selection() (torch_brain.datasets.Neuroprobe2025 method) description (torch_brain.pipeline.openneuro.OpenNeuroPipeline attribute) detokenizer() (torch_brain.nn.InfiniteVocabEmbedding method) DeviceDescription (class in torch_brain.data) difference() (torch_brain.data.Interval method) (torch_brain.data.LazyInterval method) dilate() (torch_brain.data.Interval method) (torch_brain.data.LazyInterval method) DistributedEvaluationSamplerWrapper (class in torch_brain.samplers) DistributedStitchingFixedWindowSampler (class in torch_brain.samplers) domain (torch_brain.data.Data property) (torch_brain.data.IrregularTimeSeries property) (torch_brain.data.LazyIrregularTimeSeries property) (torch_brain.data.LazyRegularTimeSeries property) (torch_brain.data.RegularTimeSeries property) download() (torch_brain.pipeline.BrainsetPipeline method) (torch_brain.pipeline.openneuro.OpenNeuroPipeline method) download_dataset_description() (in module torch_brain.utils.openneuro) download_file() (in module torch_brain.utils.dandi) download_prefix() (in module torch_brain.utils.s3) download_prefix_from_url() (in module torch_brain.utils.s3) download_recording() (in module torch_brain.utils.openneuro) downsample_wideband() (in module torch_brain.utils.signal) E end (torch_brain.data.Data property) extend_vocab() (torch_brain.nn.InfiniteVocabEmbedding method) extra_repr() (torch_brain.nn.InfiniteVocabEmbedding method) extract_bands() (in module torch_brain.utils.signal) extract_channels() (in module torch_brain.utils.mne) extract_measurement_date() (in module torch_brain.utils.mne) extract_signal() (in module torch_brain.utils.mne) extract_spikes_from_nwbfile() (in module torch_brain.utils.dandi) extract_subject_from_nwb() (in module torch_brain.utils.dandi) F fetch_all_filenames() (in module torch_brain.utils.openneuro) fetch_eeg_recordings() (in module torch_brain.utils.bids) fetch_ieeg_recordings() (in module torch_brain.utils.bids) fetch_latest_snapshot_tag() (in module torch_brain.utils.openneuro) fetch_participants_tsv() (in module torch_brain.utils.openneuro) fetch_species() (in module torch_brain.utils.openneuro) file (torch_brain.data.Data property) forward() (torch_brain.models.POYO method) (torch_brain.nn.InfiniteVocabEmbedding method) (torch_brain.nn.RotaryCrossAttention method) (torch_brain.nn.RotarySelfAttention method) (torch_brain.nn.RotaryTimeEmbedding method) (torch_brain.nn.SinusoidalTimeEmbedding method) forward_varlen() (torch_brain.nn.RotaryCrossAttention method) (torch_brain.nn.RotarySelfAttention method) from_dataframe() (torch_brain.data.ArrayDict class method) (torch_brain.data.Interval class method) (torch_brain.data.IrregularTimeSeries class method) (torch_brain.data.LazyArrayDict class method) (torch_brain.data.LazyInterval class method) (torch_brain.data.LazyIrregularTimeSeries class method) (torch_brain.data.LazyRegularTimeSeries class method) (torch_brain.data.RegularTimeSeries class method) from_gappy_timeseries() (torch_brain.data.LazyRegularTimeSeries class method) (torch_brain.data.RegularTimeSeries class method) from_hdf5() (torch_brain.data.ArrayDict class method) (torch_brain.data.Data class method) (torch_brain.data.Interval class method) (torch_brain.data.IrregularTimeSeries class method) (torch_brain.data.LazyArrayDict class method) (torch_brain.data.LazyInterval class method) (torch_brain.data.LazyIrregularTimeSeries class method) (torch_brain.data.LazyRegularTimeSeries class method) (torch_brain.data.RegularTimeSeries class method) from_list() (torch_brain.data.Interval class method) (torch_brain.data.LazyInterval class method) G generate_stratified_folds() (in module torch_brain.utils.split) generate_string_kfold_assignment() (in module torch_brain.utils.split) get_cached_s3_client() (in module torch_brain.utils.s3) get_channel_ids() (torch_brain.datasets.KlinzingSleepDS005555 method) (torch_brain.datasets.KochiVisualNamingDS006914 method) (torch_brain.datasets.MultiChannelDatasetMixin method) (torch_brain.datasets.Neuroprobe2025 method) (torch_brain.datasets.ShiraziHBNR1DS005505 method) get_channel_metadata() (torch_brain.datasets.Neuroprobe2025 method) get_channel_name_remapping() (torch_brain.pipeline.openneuro.OpenNeuroPipeline method) get_default_sampling_intervals() (torch_brain.datasets.KlinzingSleepDS005555 method) (torch_brain.datasets.KochiVisualNamingDS006914 method) (torch_brain.datasets.OpenNeuroDataset method) (torch_brain.datasets.ShiraziHBNR1DS005505 method) get_default_serialize_fn_map() (in module torch_brain.data) get_domain_intervals() (torch_brain.datasets.Neuroprobe2025 method) get_manifest() (torch_brain.pipeline.BrainsetPipeline class method) (torch_brain.pipeline.openneuro.OpenNeuroPipeline class method) get_nested_attribute() (torch_brain.data.Data method) get_nwb_asset_list() (in module torch_brain.utils.dandi) get_object_list() (in module torch_brain.utils.s3) get_recording() (torch_brain.datasets.AllenVisualCodingOphys2016 method) (torch_brain.datasets.ChurchlandShenoyNeural2012 method) (torch_brain.datasets.Dataset method) (torch_brain.datasets.KempSleepEDF2013 method) (torch_brain.datasets.KlinzingSleepDS005555 method) (torch_brain.datasets.KochiVisualNamingDS006914 method) (torch_brain.datasets.NestedDataset method) (torch_brain.datasets.Neuroprobe2025 method) (torch_brain.datasets.OdohertySabesNonhuman2017 method) (torch_brain.datasets.PeiPandarinathNLB2021 method) (torch_brain.datasets.PerichMillerPopulation2018 method) (torch_brain.datasets.ShiraziHBNR1DS005505 method) (torch_brain.datasets.VollanMoserAlternating2025 method) get_recording_hook() (torch_brain.datasets.AllenVisualCodingOphys2016 method) (torch_brain.datasets.ChurchlandShenoyNeural2012 method) (torch_brain.datasets.Dataset method) (torch_brain.datasets.KempSleepEDF2013 method) (torch_brain.datasets.KlinzingSleepDS005555 method) (torch_brain.datasets.KochiVisualNamingDS006914 method) (torch_brain.datasets.Neuroprobe2025 method) (torch_brain.datasets.OdohertySabesNonhuman2017 method) (torch_brain.datasets.PeiPandarinathNLB2021 method) (torch_brain.datasets.PerichMillerPopulation2018 method) (torch_brain.datasets.ShiraziHBNR1DS005505 method) (torch_brain.datasets.VollanMoserAlternating2025 method) get_roi_ids() (torch_brain.datasets.AllenVisualCodingOphys2016 method) (torch_brain.datasets.CalciumImagingDatasetMixin method) get_sampling_intervals() (torch_brain.datasets.AllenVisualCodingOphys2016 method) (torch_brain.datasets.ChurchlandShenoyNeural2012 method) (torch_brain.datasets.Dataset method) (torch_brain.datasets.KempSleepEDF2013 method) (torch_brain.datasets.KlinzingSleepDS005555 method) (torch_brain.datasets.KochiVisualNamingDS006914 method) (torch_brain.datasets.NestedDataset method) (torch_brain.datasets.Neuroprobe2025 method) (torch_brain.datasets.OdohertySabesNonhuman2017 method) (torch_brain.datasets.OpenNeuroDataset method) (torch_brain.datasets.PeiPandarinathNLB2021 method) (torch_brain.datasets.PerichMillerPopulation2018 method) (torch_brain.datasets.ShiraziHBNR1DS005505 method) (torch_brain.datasets.VollanMoserAlternating2025 method) get_subject_info() (in module torch_brain.utils.bids) get_type_channels_remapping() (torch_brain.pipeline.openneuro.OpenNeuroPipeline method) get_unit_ids() (torch_brain.datasets.ChurchlandShenoyNeural2012 method) (torch_brain.datasets.OdohertySabesNonhuman2017 method) (torch_brain.datasets.PeiPandarinathNLB2021 method) (torch_brain.datasets.PerichMillerPopulation2018 method) (torch_brain.datasets.SpikingDatasetMixin method) (torch_brain.datasets.VollanMoserAlternating2025 method) group_recordings_by_entity() (in module torch_brain.utils.bids) H has_nested_attribute() (torch_brain.data.Data method) I IGNORE_CHANNELS (torch_brain.pipeline.openneuro.OpenNeuroPipeline attribute) index_mask() (torch_brain.data.LazyRegularTimeSeries method) (torch_brain.data.RegularTimeSeries method) InfiniteVocabEmbedding (class in torch_brain.nn) init_vocabs() (torch_brain.models.POYO method) initialize_vocab() (torch_brain.nn.InfiniteVocabEmbedding method) Interval (class in torch_brain.data) invert() (torch_brain.nn.RotaryTimeEmbedding static method) IrregularTimeSeries (class in torch_brain.data) is_disjoint() (torch_brain.data.Interval method) (torch_brain.data.LazyInterval method) is_gappy() (torch_brain.data.LazyRegularTimeSeries method) (torch_brain.data.RegularTimeSeries method) is_lazy() (torch_brain.nn.InfiniteVocabEmbedding method) is_sorted() (torch_brain.data.Interval method) (torch_brain.data.IrregularTimeSeries method) (torch_brain.data.LazyInterval method) (torch_brain.data.LazyIrregularTimeSeries method) isin_interval() (in module torch_brain.utils) K KempSleepEDF2013 (class in torch_brain.datasets) keys() (torch_brain.data.ArrayDict method) (torch_brain.data.Data method) (torch_brain.data.Interval method) (torch_brain.data.IrregularTimeSeries method) (torch_brain.data.LazyArrayDict method) (torch_brain.data.LazyInterval method) (torch_brain.data.LazyIrregularTimeSeries method) (torch_brain.data.LazyRegularTimeSeries method) (torch_brain.data.RegularTimeSeries method) KlinzingSleepDS005555 (class in torch_brain.datasets) KochiVisualNamingDS006914 (class in torch_brain.datasets) L LazyArrayDict (class in torch_brain.data) LazyInterval (class in torch_brain.data) LazyIrregularTimeSeries (class in torch_brain.data) LazyRegularTimeSeries (class in torch_brain.data) linspace() (torch_brain.data.Interval class method) (torch_brain.data.LazyInterval class method) load() (torch_brain.data.Data class method) load_json_sidecar() (in module torch_brain.utils.bids) load_participants_tsv() (in module torch_brain.utils.bids) load_pretrained() (torch_brain.models.POYO class method) M materialize() (torch_brain.data.ArrayDict method) (torch_brain.data.Data method) (torch_brain.data.Interval method) (torch_brain.data.IrregularTimeSeries method) (torch_brain.data.LazyArrayDict method) (torch_brain.data.LazyInterval method) (torch_brain.data.LazyIrregularTimeSeries method) (torch_brain.data.LazyRegularTimeSeries method) (torch_brain.data.RegularTimeSeries method) modality (torch_brain.pipeline.openneuro.OpenNeuroPipeline attribute) module torch_brain.batching torch_brain.data torch_brain.datasets torch_brain.models torch_brain.nn torch_brain.pipeline torch_brain.pipeline.openneuro torch_brain.samplers torch_brain.transforms torch_brain.utils torch_brain.utils.bids torch_brain.utils.dandi torch_brain.utils.mne torch_brain.utils.openneuro torch_brain.utils.s3 torch_brain.utils.signal torch_brain.utils.split torch_brain.utils.stitcher MultiChannelDatasetMixin (class in torch_brain.datasets) N NestedDataset (class in torch_brain.datasets) Neuroprobe2025 (class in torch_brain.datasets) np_string_prefix() (in module torch_brain.utils) num_folds_for_regime() (torch_brain.datasets.Neuroprobe2025 class method) O OdohertySabesNonhuman2017 (class in torch_brain.datasets) OpenNeuroDataset (class in torch_brain.datasets) OpenNeuroPipeline (class in torch_brain.pipeline.openneuro) origin_version (torch_brain.pipeline.openneuro.OpenNeuroPipeline attribute) P pad() (in module torch_brain.batching) pad2d() (in module torch_brain.batching) pad2d8() (in module torch_brain.batching) pad8() (in module torch_brain.batching) parser (torch_brain.pipeline.BrainsetPipeline attribute) (torch_brain.pipeline.openneuro.OpenNeuroPipeline attribute) PeiPandarinathNLB2021 (class in torch_brain.datasets) PerichMillerPopulation2018 (class in torch_brain.datasets) POYO (class in torch_brain.models) process() (torch_brain.pipeline.BrainsetPipeline method) (torch_brain.pipeline.openneuro.OpenNeuroPipeline method) process_common() (torch_brain.pipeline.openneuro.OpenNeuroPipeline method) processed_dir (torch_brain.pipeline.BrainsetPipeline attribute) R RandomChoice (class in torch_brain.transforms) RandomCrop (class in torch_brain.transforms) RandomFixedWindowSampler (class in torch_brain.samplers) RandomOutputSampler (class in torch_brain.transforms) RandomTimeScaling (class in torch_brain.transforms) rank_len() (torch_brain.samplers.DistributedEvaluationSamplerWrapper method) raw_dir (torch_brain.pipeline.BrainsetPipeline attribute) recording_ids (torch_brain.datasets.AllenVisualCodingOphys2016 property) (torch_brain.datasets.ChurchlandShenoyNeural2012 property) (torch_brain.datasets.Dataset property) (torch_brain.datasets.KempSleepEDF2013 property) (torch_brain.datasets.KlinzingSleepDS005555 property) (torch_brain.datasets.KochiVisualNamingDS006914 property) (torch_brain.datasets.Neuroprobe2025 property) (torch_brain.datasets.OdohertySabesNonhuman2017 property) (torch_brain.datasets.PeiPandarinathNLB2021 property) (torch_brain.datasets.PerichMillerPopulation2018 property) (torch_brain.datasets.ShiraziHBNR1DS005505 property) (torch_brain.datasets.VollanMoserAlternating2025 property) register_timekey() (torch_brain.data.Interval method) (torch_brain.data.IrregularTimeSeries method) (torch_brain.data.LazyInterval method) (torch_brain.data.LazyIrregularTimeSeries method) RegularTimeSeries (class in torch_brain.data) reset_parameters() (torch_brain.nn.InfiniteVocabEmbedding method) RotaryCrossAttention (class in torch_brain.nn) RotarySelfAttention (class in torch_brain.nn) RotaryTimeEmbedding (class in torch_brain.nn) rotate() (torch_brain.nn.RotaryTimeEmbedding static method) S sampling_rate (torch_brain.data.LazyRegularTimeSeries property) (torch_brain.data.RegularTimeSeries property) (torch_brain.datasets.Neuroprobe2025 property) save() (torch_brain.data.Data method) select_by_interval() (torch_brain.data.Data method) (torch_brain.data.Interval method) (torch_brain.data.IrregularTimeSeries method) (torch_brain.data.LazyInterval method) (torch_brain.data.LazyIrregularTimeSeries method) select_by_mask() (torch_brain.data.ArrayDict method) (torch_brain.data.Interval method) (torch_brain.data.IrregularTimeSeries method) (torch_brain.data.LazyArrayDict method) (torch_brain.data.LazyInterval method) (torch_brain.data.LazyIrregularTimeSeries method) (torch_brain.data.LazyRegularTimeSeries method) (torch_brain.data.RegularTimeSeries method) sequence_index (torch_brain.samplers.DistributedStitchingFixedWindowSampler attribute) SequentialFixedWindowSampler (class in torch_brain.samplers) SessionDescription (class in torch_brain.data) set_epoch() (torch_brain.samplers.DistributedStitchingFixedWindowSampler method) set_nested_attribute() (torch_brain.data.Data method) set_params() (torch_brain.samplers.DistributedEvaluationSamplerWrapper method) set_test_domain() (torch_brain.data.Data method) set_train_domain() (torch_brain.data.Data method) set_valid_domain() (torch_brain.data.Data method) ShiraziHBNR1DS005505 (class in torch_brain.datasets) SinusoidalTimeEmbedding (class in torch_brain.nn) slice() (torch_brain.data.Data method) (torch_brain.data.Interval method) (torch_brain.data.IrregularTimeSeries method) (torch_brain.data.LazyInterval method) (torch_brain.data.LazyIrregularTimeSeries method) (torch_brain.data.LazyRegularTimeSeries method) (torch_brain.data.RegularTimeSeries method) sort() (torch_brain.data.Interval method) (torch_brain.data.IrregularTimeSeries method) (torch_brain.data.LazyInterval method) (torch_brain.data.LazyIrregularTimeSeries method) SpikingDatasetMixin (class in torch_brain.datasets) split() (torch_brain.data.Interval method) (torch_brain.data.LazyInterval method) start (torch_brain.data.Data property) stitch() (in module torch_brain.utils.stitcher) subdivide() (torch_brain.data.Interval method) (torch_brain.data.LazyInterval method) SubjectDescription (class in torch_brain.data) subset_vocab() (torch_brain.nn.InfiniteVocabEmbedding method) T timekeys() (torch_brain.data.Interval method) (torch_brain.data.IrregularTimeSeries method) (torch_brain.data.LazyInterval method) (torch_brain.data.LazyIrregularTimeSeries method) timestamps (torch_brain.data.LazyRegularTimeSeries property) (torch_brain.data.RegularTimeSeries property) to_dict() (torch_brain.data.Data method) to_hdf5() (torch_brain.data.ArrayDict method) (torch_brain.data.Data method) (torch_brain.data.Interval method) (torch_brain.data.IrregularTimeSeries method) (torch_brain.data.LazyArrayDict method) (torch_brain.data.LazyInterval method) (torch_brain.data.LazyIrregularTimeSeries method) (torch_brain.data.LazyRegularTimeSeries method) (torch_brain.data.RegularTimeSeries method) to_irregular() (torch_brain.data.LazyRegularTimeSeries method) (torch_brain.data.RegularTimeSeries method) tokenize() (torch_brain.models.POYO method) tokenizer() (torch_brain.nn.InfiniteVocabEmbedding method) torch_brain.batching module torch_brain.data module torch_brain.datasets module torch_brain.models module torch_brain.nn module torch_brain.pipeline module torch_brain.pipeline.openneuro module torch_brain.samplers module torch_brain.transforms module torch_brain.utils module torch_brain.utils.bids module torch_brain.utils.dandi module torch_brain.utils.mne module torch_brain.utils.openneuro module torch_brain.utils.s3 module torch_brain.utils.signal module torch_brain.utils.split module torch_brain.utils.stitcher module track_batch() (in module torch_brain.batching) track_mask() (in module torch_brain.batching) track_mask2d() (in module torch_brain.batching) track_mask2d8() (in module torch_brain.batching) track_mask8() (in module torch_brain.batching) TrialSampler (class in torch_brain.samplers) TriangleDistribution (class in torch_brain.transforms) TYPE_CHANNELS_REMAPPING (torch_brain.pipeline.openneuro.OpenNeuroPipeline attribute) U UnitDropout (class in torch_brain.transforms) UnitFilter (class in torch_brain.transforms) UnitFilterById (class in torch_brain.transforms) update_status() (torch_brain.pipeline.BrainsetPipeline method) V validate_dataset_id() (torch_brain.pipeline.openneuro.OpenNeuroPipeline static method) VollanMoserAlternating2025 (class in torch_brain.datasets)
